Remember this post I made a bit ago: Is there a Ghost in SharePoint?
Well I spent a good couple of days looking at all kinds of error logs trying to trick it with a feature of the same GUID. Finally, I thought what is the last thing I played with that could have a feature involved and it hit me the U2U CAML Query Builder. I installed this feature and activated it, then realized it was showing up on every single list in my site collection farm. I deactivated the feature and ran the uninstaller. I didn't really check the Content and Structure Area until last week. It made a lot of sense that this was causing the problem. I even found the GUID on there examples for the CAML Query Builder. I have since reinstalled the solution and made sure that the feature was deactivated. It stinks, because I would really like to clean up that solution from my Production Server and include it on my Test Server. Hopefully there is a new version pushed that I can fully uninstall at a later date.